SRAMM: Short Read Alignment Mapping Metrics

Short Read Alignment Mapping Metrics (SRAMM): is an efficient and versatile command line tool providing additional short read mapping metrics, filtering, graphs. aligners report MAPing Quality (MAPQ), but these methods generally are neither standardized nor well described in literature or software manuals. Additionally, third party quality programs typically computationally intensive designed for specific applications. SRAMM efficiently generates multiple different concept-based scores to provide informative post alignment examination filtering process of aligned reads various downstream compatible with Python 2.6+ 3.6+ on all operating systems. It works any aligner that SAM/BAM/CRAM file outputs reports 'AS' tags. freely available under the MIT license at http://github.com/achon/sramm.